|
This is the top-scoring MGnify protein (along with its specific region if not whole)
that was recruited in the family through hmmsearch. Links to the MGnify Proteins site.
Family representative sequence
|
MGYP001475382029/1-268
|
|
# Amino Acids (AA)
Representative length
|
268
|
|
The total number of MGnify sequences that have been iteratively recruited in the family through a series
of processes such as: creating a seed alignment from the family's initial cluster, building an HMM model,
and finally recruiting and aligning sequences from MGnify Proteins with the family HMM model.
Total number of sequences in the family
|
1565
|
|
Denotes if FunFam functional annotation hits were identified via the hmmer/hmmsearch tool.
Sequence-HMM FunFam matches
|
|
|
Denotes if Pfam functional annotation hits were identified via the hmmer/hmmsearch tool.
Sequence-HMM Pfam matches
|
|
|
Denotes if Pfam domain annotation hits were identified through model searching with the hhsuite/hhblits tool.
Profile-profile Pfam matches
|
|
|
Denotes if structure homologs of the family's representative sequence have been identified
in the AlphaFoldDB or PDB databases through the foldseek tool.
Structure-structure hits
|
|
|
This family has refined its model and stopped recruiting
new sequences from the pool in three or less iterations.
Converged
|
|